Example transcript annotation

Transcript annotation including the co-ordinates (hg38) of the genes, transcripts, exons and CDS regions for SOD1 and PKNOX1, which originate from version 105 of the Ensembl reference annotation.

Usage

sod1_annotation

pknox1_annotation

Format

A tibble::tibble():

seqnames

factor() chromosome.

start

integer() start position.

end

integer() end position.

strand

factor() strand.

type

factor() E.g.gene, transcript, exon or CDS.

gene_name

character() name of gene (GBA).

transcript_name

character() name of transcript.

transcript_biotype

character() biotype of transcript.

An object of class tbl_df (inherits from tbl, data.frame) with 112 rows and 8 columns.

Source

generated using ggtranscript/data-raw/sod1_pknox1_annotation.R