codino.process.Converter

Module Contents

Classes

Converter

class codino.process.Converter.Converter

cd_to_aa(self, first: dict, second: dict, third: dict, refresh: bool = True) → dict

Convert codon design to AA frequencies

Takes as input the nucleotide frequencies at each position in a codon, then calculates the predicted AA frequencies.

Parameters

• first (dict) – nucleotide frequencies for first position.

• second (dict) – nucleotide frequencies for second position.

• third (dict) – nucleotide frequencies for third position.

• refresh (bool) – Whether to refresh the frequencies in the Convertor

• frequencies. (after obtaining the AA) –

  Returns:

  dict: Frequencies of the AA which are predicted to be generated from the codon design.

aa_to_cd(self, aa: dict, refresh: bool = True) → tuple

Convert AA frequencies to codon design

Parameters

• aa (dict) – AA frequencies.

• refresh (bool) – Whether to refresh the frequencies in the Convertor

• design. (after obtaining the codon) –

  Returns:

  tuple: Estimated codon design to obtain the inputted AA frequencies.

_cd_to_ct(self) → None

Convert codon design into codon frequencies

_ct_to_aa(self) → None

Convert codon frequencies to AA frequencies

_aa_to_cd(self) → None

Convert AA frequencies to codon frequencies

refresh(self) → None

Refresh the frequencies in the codon design, codon table and AA table back to 0.