:py:mod:`codino.process.Converter`
==================================

.. py:module:: codino.process.Converter


Module Contents
---------------

Classes
~~~~~~~

.. autoapisummary::

   codino.process.Converter.Converter




.. py:class:: Converter

   .. py:method:: cd_to_aa(self, first: dict, second: dict, third: dict, refresh: bool = True) -> dict

      Convert codon design to AA frequencies

       Takes as input the nucleotide frequencies at each position in a codon,
       then calculates the predicted AA frequencies.

      :param first: nucleotide frequencies for first position.
      :type first: dict
      :param second: nucleotide frequencies for second position.
      :type second: dict
      :param third: nucleotide frequencies for third position.
      :type third: dict
      :param refresh: Whether to refresh the frequencies in the Convertor
      :type refresh: bool
      :param after obtaining the AA frequencies.:

       Returns:
           dict: Frequencies of the AA which are predicted to be generated from
           the codon design.



   .. py:method:: aa_to_cd(self, aa: dict, refresh: bool = True) -> tuple

      Convert AA frequencies to codon design

      :param aa: AA frequencies.
      :type aa: dict
      :param refresh: Whether to refresh the frequencies in the Convertor
      :type refresh: bool
      :param after obtaining the codon design.:

       Returns:
           tuple: Estimated codon design to obtain the inputted AA
           frequencies.



   .. py:method:: _cd_to_ct(self) -> None

      Convert codon design into codon frequencies


   .. py:method:: _ct_to_aa(self) -> None

      Convert codon frequencies to AA frequencies


   .. py:method:: _aa_to_cd(self) -> None

      Convert AA frequencies to codon frequencies


   .. py:method:: refresh(self) -> None

      Refresh the frequencies in the codon design, codon table and AA table
      back to 0.